IL_7PKQ_038

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PKQ_038 not in the Motif Atlas

Homologous match to IL_4LFB_069

Geometric discrepancy: 0.4882

The information below is about IL_4LFB_069

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7PKQ|1|4|G|316
7PKQ|1|4|U|317
7PKQ|1|4|C|318
*
7PKQ|1|4|G|406
7PKQ|1|4|U|407
7PKQ|1|4|C|408

Current chains

Chain 4

S4 rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA