IL_7PKQ_040

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PKQ_040 not in the Motif Atlas

Homologous match to IL_4LFB_059

Geometric discrepancy: 0.3844

The information below is about IL_4LFB_059

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7PKQ|1|4|C|324
7PKQ|1|4|G|325
7PKQ|1|4|A|326
*
7PKQ|1|4|U|397
7PKQ|1|4|U|398
7PKQ|1|4|G|399

Current chains

Chain 4

S4 rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain l

uS12m