IL_7PKQ_041
3D structure
- PDB id
- 7PKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of the Chlamydomonas reinhardtii mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AUAAU*AGAGU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PKQ_041 not in the Motif Atlas
- Geometric match to IL_7A0S_056
- Geometric discrepancy: 0.3291
- The information below is about IL_7A0S_056
- Detailed Annotation
- Double sheared with near cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
7PKQ|1|4|A|326
7PKQ|1|4|U|327
7PKQ|1|4|A|328
7PKQ|1|4|A|329
7PKQ|1|4|U|330
*
7PKQ|1|4|A|393
7PKQ|1|4|G|394
7PKQ|1|4|A|395
7PKQ|1|4|G|396
7PKQ|1|4|U|397
Current chains
- Chain 4
- S4 rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: