IL_7PKQ_046

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAAC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PKQ_046 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.1606

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7PKQ|1|4|G|346
7PKQ|1|4|A|347
7PKQ|1|4|A|348
7PKQ|1|4|C|349
*
7PKQ|1|4|G|375
7PKQ|1|4|A|376
7PKQ|1|4|A|377
7PKQ|1|4|C|378

Current chains

Chain 4

S4 rRNA

Nearby chains

Chain 2

S2 rRNA

Chain O

mS106

Chain P

mS107