IL_7PNX_013

3D structure

PDB id

7PNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

7PNX|1|A|A|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PNX_013 not in the Motif Atlas

Homologous match to IL_5J7L_019

Geometric discrepancy: 0.1201

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

7PNX|1|A|U|838
7PNX|1|A|A|839
*
7PNX|1|A|U|850
7PNX|1|A|A|851
7PNX|1|A|A|852

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain M

28S ribosomal protein S16, mitochondrial

Chain R

28S ribosomal protein S22, mitochondrial

Chain U

28S ribosomal protein S26, mitochondrial