IL_7PNX_023

3D structure

PDB id

7PNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PNX_023 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.1834

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7PNX|1|A|A|1067
7PNX|1|A|A|1068
7PNX|1|A|A|1069
7PNX|1|A|C|1070
7PNX|1|A|U|1071
*
7PNX|1|A|A|1087
7PNX|1|A|C|1088
7PNX|1|A|U|1089
7PNX|1|A|A|1090
7PNX|1|A|U|1091

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain I

28S ribosomal protein S11, mitochondrial

Chain Q

28S ribosomal protein S21, mitochondrial