IL_7PNY_023

3D structure

PDB id

7PNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PNY_023 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1572

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7PNY|1|A|A|1067
7PNY|1|A|A|1068
7PNY|1|A|A|1069
7PNY|1|A|C|1070
7PNY|1|A|U|1071
*
7PNY|1|A|A|1087
7PNY|1|A|C|1088
7PNY|1|A|U|1089
7PNY|1|A|A|1090
7PNY|1|A|U|1091

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain I

28S ribosomal protein S11, mitochondrial

Chain Q

28S ribosomal protein S21, mitochondrial