IL_7PNY_049

3D structure

PDB id

7PNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UGA*UCCA

Length

7 nucleotides

Bulged bases

7PNY|1|A|C|1001

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PNY_049 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.2241

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7PNY|1|A|U|985
7PNY|1|A|G|986
7PNY|1|A|A|987
*
7PNY|1|A|U|1000
7PNY|1|A|C|1001
7PNY|1|A|C|1002
7PNY|1|A|A|1003

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain I

28S ribosomal protein S11, mitochondrial