IL_7PNZ_028

3D structure

PDB id

7PNZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

AUAUC*GCCCU

Length

10 nucleotides

Bulged bases

7PNZ|1|A|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PNZ_028 not in the Motif Atlas

Geometric match to IL_4V9F_051

Geometric discrepancy: 0.1908

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

7PNZ|1|A|A|1186
7PNZ|1|A|U|1187
7PNZ|1|A|A|1188
7PNZ|1|A|U|1189
7PNZ|1|A|C|1190
*
7PNZ|1|A|G|1464
7PNZ|1|A|C|1465
7PNZ|1|A|C|1466
7PNZ|1|A|C|1467
7PNZ|1|A|U|1468

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain F

28S ribosomal protein S7, mitochondrial

Chain G

28S ribosomal protein S9, mitochondrial