IL_7PNZ_040

3D structure

PDB id

7PNZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

G(B8T)C(5MC)G*CGUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8T, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PNZ_040 not in the Motif Atlas

Homologous match to IL_4LFB_057

Geometric discrepancy: 0.1452

The information below is about IL_4LFB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7PNZ|1|A|G|1485
7PNZ|1|A|B8T|1486
7PNZ|1|A|C|1487
7PNZ|1|A|5MC|1488
7PNZ|1|A|G|1489
*
7PNZ|1|A|C|1561
7PNZ|1|A|G|1562
7PNZ|1|A|U|1563
7PNZ|1|A|A|1564
7PNZ|1|A|A|1565
7PNZ|1|A|C|1566

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain b

12S rRNA N4-methylcytidine (m4C) methyltransferase