3D structure

PDB id
7PNZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c
Experimental method
ELECTRON MICROSCOPY
Resolution
3.09 Å

Loop

Sequence
AUCACCCCCUCCCCAAU*AACAUAU
Length
24 nucleotides
Bulged bases
7PNZ|1|A|C|954, 7PNZ|1|A|C|959, 7PNZ|1|A|C|960, 7PNZ|1|A|U|961, 7PNZ|1|A|A|966, 7PNZ|1|A|A|1041
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7PNZ|1|A|A|952
7PNZ|1|A|U|953
7PNZ|1|A|C|954
7PNZ|1|A|A|955
7PNZ|1|A|C|956
7PNZ|1|A|C|957
7PNZ|1|A|C|958
7PNZ|1|A|C|959
7PNZ|1|A|C|960
7PNZ|1|A|U|961
7PNZ|1|A|C|962
7PNZ|1|A|C|963
7PNZ|1|A|C|964
7PNZ|1|A|C|965
7PNZ|1|A|A|966
7PNZ|1|A|A|967
7PNZ|1|A|U|968
*
7PNZ|1|A|A|1036
7PNZ|1|A|A|1037
7PNZ|1|A|C|1038
7PNZ|1|A|A|1039
7PNZ|1|A|U|1040
7PNZ|1|A|A|1041
7PNZ|1|A|U|1042

Current chains

Chain A
12S mitochondrial rRNA

Nearby chains

Chain E
28S ribosomal protein S6, mitochondrial
Chain J
28S ribosomal protein S12, mitochondrial
Chain L
28S ribosomal protein S15, mitochondrial
Chain N
28S ribosomal protein S17, mitochondrial
Chain P
28S ribosomal protein S18c, mitochondrial
Chain S
28S ribosomal protein S23, mitochondrial
Chain T
28S ribosomal protein S25, mitochondrial
Chain U
28S ribosomal protein S26, mitochondrial

Coloring options:

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