IL_7PO4_013

3D structure

PDB id

7PO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GAG*CUACC

Length

8 nucleotides

Bulged bases

7PO4|1|A|A|1986, 7PO4|1|A|U|1998, 7PO4|1|A|A|1999, 7PO4|1|A|C|2000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PO4_013 not in the Motif Atlas

Geometric match to IL_7A0S_021

Geometric discrepancy: 0.1287

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_89509.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

7PO4|1|A|G|1985
7PO4|1|A|A|1986
7PO4|1|A|G|1987
*
7PO4|1|A|C|1997
7PO4|1|A|U|1998
7PO4|1|A|A|1999
7PO4|1|A|C|2000
7PO4|1|A|C|2001

Current chains

Chain A

16SrRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial

Chain F

39S ribosomal protein L4, mitochondrial