IL_7PO4_016
3D structure
- PDB id
- 7PO4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- GAG*CC
- Length
- 5 nucleotides
- Bulged bases
- 7PO4|1|A|A|2146
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PO4_016 not in the Motif Atlas
- Geometric match to IL_5TBW_013
- Geometric discrepancy: 0.2822
- The information below is about IL_5TBW_013
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
7PO4|1|A|G|2145
7PO4|1|A|A|2146
7PO4|1|A|G|2147
*
7PO4|1|A|C|2254
7PO4|1|A|C|2255
Current chains
- Chain A
- 16SrRNA
Nearby chains
- Chain K
- 39S ribosomal protein L13, mitochondrial
- Chain R
- 39S ribosomal protein L20, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain T
- 39S ribosomal protein L22, mitochondrial
- Chain Z
- 39S ribosomal protein L30, mitochondrial
- Chain a
- 39S ribosomal protein L42, mitochondrial
- Chain b
- 39S ribosomal protein L43, mitochondrial
- Chain j
- 39S ribosomal protein L52, mitochondrial
Coloring options: