IL_7PWG_004
3D structure
- PDB id
- 7PWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GGAACUU*AUCAG(OMU)AC
- Length
- 15 nucleotides
- Bulged bases
- 7PWG|1|1|G|48
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PWG_004 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.2879
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
7PWG|1|1|G|31
7PWG|1|1|G|32
7PWG|1|1|A|33
7PWG|1|1|A|34
7PWG|1|1|C|35
7PWG|1|1|U|36
7PWG|1|1|U|37
*
7PWG|1|1|A|44
7PWG|1|1|U|45
7PWG|1|1|C|46
7PWG|1|1|A|47
7PWG|1|1|G|48
7PWG|1|1|OMU|49
7PWG|1|1|A|50
7PWG|1|1|C|51
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain a
- Ribosomal protein L27a
- Chain j
- Ribosomal protein L37
- Chain o
- Ribosomal protein L44
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