IL_7PWG_007

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

AG*CGCUGU

Length

8 nucleotides

Bulged bases

7PWG|1|1|U|126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_007 not in the Motif Atlas

Geometric match to IL_5TBW_007

Geometric discrepancy: 0.1394

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7PWG|1|1|A|118
7PWG|1|1|G|119
*
7PWG|1|1|C|123
7PWG|1|1|G|124
7PWG|1|1|C|125
7PWG|1|1|U|126
7PWG|1|1|G|127
7PWG|1|1|U|128

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain 4

rRNA 5.8S

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15