IL_7PWG_012

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCG*CCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_012 not in the Motif Atlas

Geometric match to IL_7A0S_019

Geometric discrepancy: 0.3581

The information below is about IL_7A0S_019

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

7PWG|1|1|C|363
7PWG|1|1|C|364
7PWG|1|1|G|365
*
7PWG|1|4|C|7
7PWG|1|4|C|8
7PWG|1|4|C|9
7PWG|1|4|G|10

Current chains

Chain 1

rRNA 28S

Chain 4

rRNA 5.8S

Nearby chains

Chain P

Ribosomal protein L17

Chain e

Ribosomal protein L32