IL_7PWG_034

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCCGG*CG

Length

7 nucleotides

Bulged bases

7PWG|1|1|C|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_034 not in the Motif Atlas

Homologous match to IL_8C3A_062

Geometric discrepancy: 0.5689

The information below is about IL_8C3A_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7PWG|1|1|C|1071
7PWG|1|1|C|1072
7PWG|1|1|C|1073
7PWG|1|1|G|1074
7PWG|1|1|G|1075
*
7PWG|1|1|C|1107
7PWG|1|1|G|1108

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain 4

rRNA 5.8S

Chain C

Ribosomal protein L4

Chain e

Ribosomal protein L32