IL_7PWG_050

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGGAA*U(OMC)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_050 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.3638

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

7PWG|1|1|G|1528
7PWG|1|1|G|1529
7PWG|1|1|G|1530
7PWG|1|1|A|1531
7PWG|1|1|A|1532
*
7PWG|1|1|U|1823
7PWG|1|1|OMC|1824
7PWG|1|1|C|1825

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B

Ribosomal protein L3

Chain V

Ribosomal protein L23

Chain W

Ribosomal protein L24A