IL_7PWG_056

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

C(OMC)AG*CG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_056 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.0963

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7PWG|1|1|C|1683
7PWG|1|1|OMC|1684
7PWG|1|1|A|1685
7PWG|1|1|G|1686
*
7PWG|1|1|C|1732
7PWG|1|1|G|1733

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain A

Ribosomal protein L2