IL_7PWG_065

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCA*UACC

Length

7 nucleotides

Bulged bases

7PWG|1|1|C|1884, 7PWG|1|1|C|2404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_065 not in the Motif Atlas

Geometric match to IL_5TBW_092

Geometric discrepancy: 0.1558

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7PWG|1|1|G|1883
7PWG|1|1|C|1884
7PWG|1|1|A|1885
*
7PWG|1|1|U|2402
7PWG|1|1|A|2403
7PWG|1|1|C|2404
7PWG|1|1|C|2405

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B

Ribosomal protein L3

Chain P

Ribosomal protein L17