IL_7PWG_084

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

A(OMC)C*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_084 not in the Motif Atlas

Homologous match to IL_8C3A_121

Geometric discrepancy: 0.2407

The information below is about IL_8C3A_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7PWG|1|1|A|2379
7PWG|1|1|OMC|2380
7PWG|1|1|C|2381
*
7PWG|1|1|G|2393
7PWG|1|1|G|2394
7PWG|1|1|U|2395

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain A

Ribosomal protein L2

Chain E

P-site tRNA