IL_7PWG_093

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_093 not in the Motif Atlas

Geometric match to IL_4V88_385

Geometric discrepancy: 0.194

The information below is about IL_4V88_385

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7PWG|1|1|G|2567
7PWG|1|1|C|2568
7PWG|1|1|C|2569
*
7PWG|1|1|G|2603
7PWG|1|1|C|2604
7PWG|1|1|C|2605

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B

Ribosomal protein L3

Chain O

Ribosomal protein L13a