IL_7PWG_096

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

AGGG*CGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_096 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.1264

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7PWG|1|1|A|2649
7PWG|1|1|G|2650
7PWG|1|1|G|2651
7PWG|1|1|G|2652
*
7PWG|1|1|C|2663
7PWG|1|1|G|2664
7PWG|1|1|U|2665
7PWG|1|1|U|2666

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain R

Ribosomal protein L19

Chain U

Ribosomal protein eL22