IL_7PWG_106

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_106 not in the Motif Atlas

Geometric match to IL_406D_004

Geometric discrepancy: 0.2857

The information below is about IL_406D_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

7PWG|1|1|C|477
7PWG|1|1|G|478
7PWG|1|1|C|479
*
7PWG|1|1|G|488
7PWG|1|1|C|489
7PWG|1|1|G|490

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain L

60S ribosomal protein L13

Chain a

Ribosomal protein L27a