IL_7PZY_009

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UG*UGUGUA

Length

8 nucleotides

Bulged bases

7PZY|1|1|U|250, 7PZY|1|1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_009 not in the Motif Atlas

Homologous match to IL_8C3A_010

Geometric discrepancy: 0.1429

The information below is about IL_8C3A_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33817.1

Basepair signature

cWW-R-L-L-L

Number of instances in this motif group

1

Unit IDs

7PZY|1|1|U|168
7PZY|1|1|G|169
*
7PZY|1|1|U|248
7PZY|1|1|G|249
7PZY|1|1|U|250
7PZY|1|1|G|251
7PZY|1|1|U|252
7PZY|1|1|A|253

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AI

Ribosomal 60S subunit protein L35A

Chain t

60S ribosomal protein L13