IL_7PZY_029

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

7PZY|1|1|A|892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_029 not in the Motif Atlas

Geometric match to IL_4WF9_022

Geometric discrepancy: 0.1173

The information below is about IL_4WF9_022

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7PZY|1|1|A|824
7PZY|1|1|U|825
*
7PZY|1|1|A|891
7PZY|1|1|A|892
7PZY|1|1|U|893

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AH

Ribosomal 60S subunit protein L34B

Chain AQ

Ribosomal 60S subunit protein L43A

Chain j

Ribosomal 60S subunit protein L2A