IL_7PZY_058

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7PZY|1|1|A|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_058 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.3793

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7PZY|1|1|G|1258
7PZY|1|1|A|1259
7PZY|1|1|G|1260
7PZY|1|1|U|1261
7PZY|1|1|G|1262
*
7PZY|1|1|C|1271
7PZY|1|1|U|1272
7PZY|1|1|C|1273

Current chains

Chain 1

25S ribosomal RNA

Nearby chains