IL_7PZY_072

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_072 not in the Motif Atlas

Homologous match to IL_8C3A_074

Geometric discrepancy: 0.0619

The information below is about IL_8C3A_074

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7PZY|1|1|G|1657
7PZY|1|1|G|1658
7PZY|1|1|C|1659
*
7PZY|1|1|G|1782
7PZY|1|1|A|1783
7PZY|1|1|C|1784

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AH

Ribosomal 60S subunit protein L34B

Chain AQ

Ribosomal 60S subunit protein L43A

Chain z

Ribosomal protein L19