IL_7PZY_094

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

7PZY|1|1|A|2185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_094 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.1326

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7PZY|1|1|G|2184
7PZY|1|1|A|2185
7PZY|1|1|A|2186
7PZY|1|1|U|2187
7PZY|1|1|G|2188
*
7PZY|1|1|C|2213
7PZY|1|1|G|2214
7PZY|1|1|C|2215

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 10

Transfer RNA; tRNA

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain j

Ribosomal 60S subunit protein L2A