IL_7PZY_100

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

7PZY|1|1|U|2388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_100 not in the Motif Atlas

Homologous match to IL_8C3A_098

Geometric discrepancy: 0.048

The information below is about IL_8C3A_098

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7PZY|1|1|G|2387
7PZY|1|1|U|2388
7PZY|1|1|U|2389
*
7PZY|1|1|A|2783
7PZY|1|1|C|2784

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AB

Ribosomal 60S subunit protein L28

Chain AC

60S ribosomal protein L29

Chain l

Ribosomal 60S subunit protein L4B