IL_7PZY_116

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_116 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.0777

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7PZY|1|1|C|2861
7PZY|1|1|A|2862
7PZY|1|1|U|2863
*
7PZY|1|1|G|2884
7PZY|1|1|C|2885
7PZY|1|1|G|2886

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

Ribosomal 60S subunit protein L23B

Chain k

60S ribosomal protein L3