IL_7PZY_117

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

7PZY|1|1|A|2883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_117 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.1073

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

7PZY|1|1|U|2863
7PZY|1|1|A|2864
*
7PZY|1|1|U|2881
7PZY|1|1|A|2882
7PZY|1|1|A|2883
7PZY|1|1|G|2884

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AN

Rpl40bp

Chain q

Ribosomal 60S subunit protein L9B

Chain w

Ribosomal 60S subunit protein L16A