IL_7PZY_224

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PZY_224 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1031

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7PZY|1|A|G|1527
7PZY|1|A|G|1528
7PZY|1|A|G|1529
7PZY|1|A|A|1530
7PZY|1|A|U|1531
7PZY|1|A|A|1532
*
7PZY|1|A|U|1553
7PZY|1|A|U|1554
7PZY|1|A|C|1555
7PZY|1|A|A|1556
7PZY|1|A|A|1557
7PZY|1|A|C|1558

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain T

Ribosomal 40S subunit protein S18B

Chain U

Ribosomal 40S subunit protein S19A