IL_7Q0F_079

3D structure

PDB id

7Q0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with phyllanthoside

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q0F_079 not in the Motif Atlas

Homologous match to IL_8C3A_082

Geometric discrepancy: 0.0773

The information below is about IL_8C3A_082

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

7Q0F|1|1|G|1894
7Q0F|1|1|G|1895
7Q0F|1|1|A|1896
7Q0F|1|1|A|1897
*
7Q0F|1|1|U|2314
7Q0F|1|1|C|2315

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

Ribosomal 60S subunit protein L23B

Chain k

Ribosomal 60S subunit protein L3