IL_7Q0R_019
3D structure
- PDB id
- 7Q0R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Candida albicans 80S ribosome in complex with blasticidin s
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GGAUAAUGGC*GACGAUAC
- Length
- 18 nucleotides
- Bulged bases
- 7Q0R|1|1|A|515, 7Q0R|1|1|U|516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7Q0R_019 not in the Motif Atlas
- Homologous match to IL_8C3A_021
- Geometric discrepancy: 0.0566
- The information below is about IL_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18200.1
- Basepair signature
- cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7Q0R|1|1|G|513
7Q0R|1|1|G|514
7Q0R|1|1|A|515
7Q0R|1|1|U|516
7Q0R|1|1|A|517
7Q0R|1|1|A|518
7Q0R|1|1|U|519
7Q0R|1|1|G|520
7Q0R|1|1|G|521
7Q0R|1|1|C|522
*
7Q0R|1|1|G|564
7Q0R|1|1|A|565
7Q0R|1|1|C|566
7Q0R|1|1|G|567
7Q0R|1|1|A|568
7Q0R|1|1|U|569
7Q0R|1|1|A|570
7Q0R|1|1|C|571
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 0
- 60S ribosomal protein L20
- Chain l
- Ribosomal 60S subunit protein L4B
- Chain o
- Ribosomal 60S subunit protein L7A
- Chain u
- Ribosomal 60S subunit protein L14B
Coloring options: