IL_7Q0R_026

3D structure

PDB id

7Q0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Candida albicans 80S ribosome in complex with blasticidin s

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q0R_026 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1492

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7Q0R|1|1|C|754
7Q0R|1|1|U|755
7Q0R|1|1|G|756
7Q0R|1|1|A|757
7Q0R|1|1|U|758
7Q0R|1|1|G|759
*
7Q0R|1|1|C|764
7Q0R|1|1|G|765
7Q0R|1|1|G|766
7Q0R|1|1|A|767
7Q0R|1|1|U|768
7Q0R|1|1|G|769

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AB

Ribosomal 60S subunit protein L28

Chain AP

Ribosomal 60S subunit protein L42A

Chain t

60S ribosomal protein L13