IL_7Q0R_033

3D structure

PDB id

7Q0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Candida albicans 80S ribosome in complex with blasticidin s

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

7Q0R|1|1|U|870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q0R_033 not in the Motif Atlas

Homologous match to IL_8C3A_035

Geometric discrepancy: 0.0512

The information below is about IL_8C3A_035

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7Q0R|1|1|C|869
7Q0R|1|1|U|870
7Q0R|1|1|G|871
*
7Q0R|1|1|C|882
7Q0R|1|1|G|883

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AK

Ribosomal protein L37

Chain k

60S ribosomal protein L3