IL_7Q0R_058

3D structure

PDB id

7Q0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Candida albicans 80S ribosome in complex with blasticidin s

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7Q0R|1|1|A|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q0R_058 not in the Motif Atlas

Geometric match to IL_5TBW_031

Geometric discrepancy: 0.216

The information below is about IL_5TBW_031

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7Q0R|1|1|G|1258
7Q0R|1|1|A|1259
7Q0R|1|1|G|1260
7Q0R|1|1|U|1261
7Q0R|1|1|G|1262
*
7Q0R|1|1|C|1271
7Q0R|1|1|U|1272
7Q0R|1|1|C|1273

Current chains

Chain 1

25S ribosomal RNA

Nearby chains