IL_7Q0R_115

3D structure

PDB id

7Q0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Candida albicans 80S ribosome in complex with blasticidin s

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

7Q0R|1|1|A|2913, 7Q0R|1|1|C|2914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q0R_115 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.0691

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7Q0R|1|1|C|2853
7Q0R|1|1|U|2854
*
7Q0R|1|1|A|2912
7Q0R|1|1|A|2913
7Q0R|1|1|C|2914
7Q0R|1|1|G|2915

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

Ribosomal 60S subunit protein L23B

Chain k

60S ribosomal protein L3

Chain w

Ribosomal 60S subunit protein L16A