IL_7Q0R_161

3D structure

PDB id

7Q0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Candida albicans 80S ribosome in complex with blasticidin s

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CCGU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q0R_161 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.1944

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7Q0R|1|A|C|147
7Q0R|1|A|C|148
7Q0R|1|A|G|149
7Q0R|1|A|U|150
*
7Q0R|1|A|A|160
7Q0R|1|A|G|161
7Q0R|1|A|A|162
7Q0R|1|A|G|163

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S6

Chain Z

40S ribosomal protein S24