IL_7Q0R_246
3D structure
- PDB id
- 7Q0R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Candida albicans 80S ribosome in complex with blasticidin s
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- UGCAUGGC*GUCUGUGAUG
- Length
- 18 nucleotides
- Bulged bases
- 7Q0R|1|A|C|1259, 7Q0R|1|A|U|1418, 7Q0R|1|A|G|1421
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7Q0R_246 not in the Motif Atlas
- Homologous match to IL_8C3A_505
- Geometric discrepancy: 0.0623
- The information below is about IL_8C3A_505
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06463.1
- Basepair signature
- cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
7Q0R|1|A|U|1257
7Q0R|1|A|G|1258
7Q0R|1|A|C|1259
7Q0R|1|A|A|1260
7Q0R|1|A|U|1261
7Q0R|1|A|G|1262
7Q0R|1|A|G|1263
7Q0R|1|A|C|1264
*
7Q0R|1|A|G|1415
7Q0R|1|A|U|1416
7Q0R|1|A|C|1417
7Q0R|1|A|U|1418
7Q0R|1|A|G|1419
7Q0R|1|A|U|1420
7Q0R|1|A|G|1421
7Q0R|1|A|A|1422
7Q0R|1|A|U|1423
7Q0R|1|A|G|1424
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain E
- Ribosomal 40S subunit protein S3
- Chain L
- Ribosomal 40S subunit protein S10A
- Chain V
- Ribosomal 40S subunit protein S20
- Chain e
- Ribosomal 40S subunit protein S29A
- Chain g
- Ubiquitin-ribosomal 40S subunit protein S31 fusion protein
- Chain i
- HABP4_PAI-RBP1 domain-containing protein
Coloring options: