IL_7Q4K_020

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0961

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7Q4K|1|AA|U|409
7Q4K|1|AA|G|410
7Q4K|1|AA|A|411
7Q4K|1|AA|A|412
7Q4K|1|AA|G|413
7Q4K|1|AA|A|414
7Q4K|1|AA|A|415
7Q4K|1|AA|G|416
*
7Q4K|1|AA|U|427
7Q4K|1|AA|G|428
7Q4K|1|AA|U|429
7Q4K|1|AA|A|430
7Q4K|1|AA|A|431
7Q4K|1|AA|A|432
7Q4K|1|AA|G|433

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4