IL_7Q4K_038

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_038 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0682

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7Q4K|1|AA|C|779
7Q4K|1|AA|A|780
7Q4K|1|AA|A|781
7Q4K|1|AA|A|782
7Q4K|1|AA|C|783
*
7Q4K|1|AA|G|799
7Q4K|1|AA|G|800
7Q4K|1|AA|U|801
7Q4K|1|AA|A|802
7Q4K|1|AA|G|803

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain AU

30S ribosomal protein S21

Chain BA

Large subunit ribosomal RNA; LSU rRNA