IL_7Q4K_046

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGUU*AAUGUGCCUUCGGGAAC

Length

23 nucleotides

Bulged bases

7Q4K|1|AA|U|1030

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_046 not in the Motif Atlas

Geometric match to IL_5J7L_045

Geometric discrepancy: 0.3268

The information below is about IL_5J7L_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13394.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

Number of instances in this motif group

1

Unit IDs

7Q4K|1|AA|G|1003
7Q4K|1|AA|A|1004
7Q4K|1|AA|A|1005
7Q4K|1|AA|G|1006
7Q4K|1|AA|U|1007
7Q4K|1|AA|U|1008
*
7Q4K|1|AA|A|1021
7Q4K|1|AA|A|1022
7Q4K|1|AA|U|1023
7Q4K|1|AA|G|1024
7Q4K|1|AA|U|1025
7Q4K|1|AA|G|1026
7Q4K|1|AA|C|1027
7Q4K|1|AA|C|1028
7Q4K|1|AA|U|1029
7Q4K|1|AA|U|1030
7Q4K|1|AA|C|1031
7Q4K|1|AA|G|1032
7Q4K|1|AA|G|1033
7Q4K|1|AA|G|1034
7Q4K|1|AA|A|1035
7Q4K|1|AA|A|1036
7Q4K|1|AA|C|1037

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14