IL_7Q4K_049

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

7Q4K|1|AA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_049 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.0909

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7Q4K|1|AA|U|1052
7Q4K|1|AA|G|1053
7Q4K|1|AA|C|1054
7Q4K|1|AA|A|1055
7Q4K|1|AA|U|1056
*
7Q4K|1|AA|A|1204
7Q4K|1|AA|U|1205
7Q4K|1|AA|G|1206

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14