IL_7Q4K_058

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_058 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1305

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7Q4K|1|AA|C|1259
7Q4K|1|AA|G|1260
7Q4K|1|AA|A|1261
7Q4K|1|AA|C|1262
7Q4K|1|AA|C|1263
*
7Q4K|1|AA|G|1272
7Q4K|1|AA|C|1273
7Q4K|1|AA|A|1274
7Q4K|1|AA|A|1275
7Q4K|1|AA|G|1276

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14

Chain AS

30S ribosomal protein S19