IL_7Q4K_062
3D structure
- PDB id
- 7Q4K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GU(5MC)AC*GAAGUC
- Length
- 11 nucleotides
- Bulged bases
- 7Q4K|1|AA|A|1493
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7Q4K_062 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.4551
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7Q4K|1|AA|G|1405
7Q4K|1|AA|U|1406
7Q4K|1|AA|5MC|1407
7Q4K|1|AA|A|1408
7Q4K|1|AA|C|1409
*
7Q4K|1|AA|G|1491
7Q4K|1|AA|A|1492
7Q4K|1|AA|A|1493
7Q4K|1|AA|G|1494
7Q4K|1|AA|U|1495
7Q4K|1|AA|C|1496
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AL
- 30S ribosomal protein S12
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain D2
- Transfer RNA; tRNA
- Chain D4
- MsrDL mRNA
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