IL_7Q4K_073

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_073 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.0703

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7Q4K|1|BA|G|188
7Q4K|1|BA|G|189
7Q4K|1|BA|A|190
7Q4K|1|BA|A|191
7Q4K|1|BA|C|192
7Q4K|1|BA|U|193
7Q4K|1|BA|G|194
*
7Q4K|1|BA|C|201
7Q4K|1|BA|U|202
7Q4K|1|BA|A|203
7Q4K|1|BA|A|204
7Q4K|1|BA|G|205
7Q4K|1|BA|U|206
7Q4K|1|BA|A|207
7Q4K|1|BA|C|208

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BL

50S ribosomal protein L15

Chain BX

50S ribosomal protein L28