IL_7Q4K_078

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

7Q4K|1|BA|A|504, 7Q4K|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_078 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0684

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

7Q4K|1|BA|G|481
7Q4K|1|BA|A|482
7Q4K|1|BA|A|483
7Q4K|1|BA|C|484
*
7Q4K|1|BA|G|496
7Q4K|1|BA|A|497
7Q4K|1|BA|G|498
7Q4K|1|BA|U|499
7Q4K|1|BA|G|500
7Q4K|1|BA|A|501
7Q4K|1|BA|A|502
7Q4K|1|BA|A|503
7Q4K|1|BA|A|504
7Q4K|1|BA|A|505
7Q4K|1|BA|G|506
7Q4K|1|BA|A|507
7Q4K|1|BA|A|508
7Q4K|1|BA|C|509

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24