IL_7Q4K_131

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7Q4K|1|BA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_131 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0787

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7Q4K|1|BA|C|1686
7Q4K|1|BA|G|1687
7Q4K|1|BA|U|1688
7Q4K|1|BA|A|1689
7Q4K|1|BA|A|1690
7Q4K|1|BA|C|1691
*
7Q4K|1|BA|G|1696
7Q4K|1|BA|G|1697
7Q4K|1|BA|A|1698
7Q4K|1|BA|G|1699
7Q4K|1|BA|A|1700
7Q4K|1|BA|A|1701
7Q4K|1|BA|G|1702

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2